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elegios merged 1 commit into from
Nov 2, 2026
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Changelog update for v0.5 #60

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46 changes: 46 additions & 0 deletions docs/changelog.md
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Expand Up @@ -24,6 +24,52 @@ and this project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0

### Security

## v0.5

### Added
- ([dppl#239](https://github.com/miking-lang/miking-dppl/pull/239), [treeppl#161](https://github.com/treeppl/treeppl/pull/161)) `--debug-graph-json <FILE>` to output a json representation of the graph generated when running a model compiled with `mcmc-graph`.
- ([dppl#243](https://github.com/miking-lang/miking-dppl/pull/243), [treeppl#161](https://github.com/treeppl/treeppl/pull/161)) `--debug-idealized <FILE>` to output a pretty-printed version of the graph after the idealized transformation stage.
- ([dppl#240](https://github.com/miking-lang/miking-dppl/pull/240), [dppl#242](https://github.com/miking-lang/miking-dppl/pull/242)) Improved the graph translation performed in `-m mcmc-graph`
- ([dppl#245](https://github.com/miking-lang/miking-dppl/pull/245), [treeppl#163](https://github.com/treeppl/treeppl/pull/163)) Add `--max-propagations INT` to limit `smc-apf` near infinite loop (see `tpplc --help` for more details)
- ([treeppl#165](https://github.com/treeppl/treeppl/pull/165)) A `tpplc --version` flag that prints a version number when given to a released compiler and `~git~` when given to a manually built compiler.
- ([treeppl#169](https://github.com/treeppl/treeppl/pull/169)) Add `all` function.
- ([treepplr#12](https://github.com/treeppl/treepplr/pull/12)) Add `tp_runtime_options`
- ([treepplr#13](https://github.com/treeppl/treepplr/pull/13)) `tp_run(n_runs)` to run multiple sweeps/runs
- ([treepplr#13](https://github.com/treeppl/treepplr/pull/13)) `tp_run(n_processes)` to run MCMC or SMC in parallel using n cores
- ([treepplr#13](https://github.com/treeppl/treepplr/pull/13)) `tp_compile_methods()` to find available methods
- ([treepplr#14](https://github.com/treeppl/treepplr/pull/14)) Tim and Stenio as package authors in DESCRIPTION.
- ([treeppl#173](https://github.com/treeppl/treeppl/pull/173)) Add `bool2int` function
- ([treeppl#173](https://github.com/treeppl/treeppl/pull/173)) Inference test suite
- ([treepplr#31](https://github.com/treeppl/treepplr/pull/31)) At the end of a run, `tp_run()` now prints a summary with runtime information and output directories/files.
- ([treepplr#31](https://github.com/treeppl/treepplr/pull/31)) New argument `wide` in `tp_parse_smc()` and `tp_parse_mcmc()` to choose between wide (standard in other software) and long (good for plotting) format. Default = `TRUE`.

### Changed
- ([treeppl#172](https://github.com/treeppl/treeppl/pull/172)) Updated external dependencies
- ([treepplr#12](https://github.com/treeppl/treepplr/pull/12)) Change "compiled_model" to "sampler" (temporary)
- ([treepplr#13](https://github.com/treeppl/treepplr/pull/13)) Updated the documentation
- ([treepplr#14](https://github.com/treeppl/treepplr/pull/14)) treepplr package installation should be done with `pak::pak` because `devtools::install_github` will soon be deprecated.
- ([treepplr#30](https://github.com/treeppl/treepplr/pull/30)) Updated roxygen documentation for `tp_parse_smc()` and `tp_parse_mcmc()`. Changed their output objects to tidy data frames.
- ([miking#1006](https://github.com/miking-lang/miking/pull/1006), [dppl#246](https://github.com/miking-lang/miking-dppl/pull/246), [treeppl#165](https://github.com/treeppl/treeppl/pull/165)) Rearranged `tpplc --help` output for nicer readability
- ([treepplr#31](https://github.com/treeppl/treepplr/pull/31)) `tp_run()` now returns a tidy data frame (in wide format by default) instead of a list. It automatically calls `tp_parse_smc()` or `tp_parse_mcmc()`, depending on the inference method and model passed to `tp_compile()`. For models without a parser yet (e.g., models that return trees), it returns the path to the output JSON file along with a message.
- ([treepplr#31](https://github.com/treeppl/treepplr/pull/31)) `tp_parse_smc()` and `tp_parse_mcmc()` now take a character vector with the path(s) to the JSON output file(s) instead of the list returned by `tp_run()`.
- ([treepplr#31](https://github.com/treeppl/treepplr/pull/31)) `tp_mcmc_convergence()` and `tp_smc_convergence()` now accept data frames in either long or wide format.

### Deprecated
- ([treepplr#12](https://github.com/treeppl/treepplr/pull/12)) all references to `n_runs` have been remove

### Removed

### Fixed
- ([treeppl#162](https://github.com/treeppl/treeppl/pull/162)) Matrix operations should no longer be compiled incorrectly when using `mcmc-graph`.
- ([treeppl#166](https://github.com/treeppl/treeppl/pull/166)) Lexing errors now point at the actual problem
- ([treeppl#172](https://github.com/treeppl/treeppl/pull/172)) Updated builds to work on MacOS 27
- ([treepplr#12](https://github.com/treeppl/treepplr/pull/12)) Always check if tpplc is installed before calling it
- ([treepplr#12](https://github.com/treeppl/treepplr/pull/12)) `tp_compile_options` update for new `--help` format
- ([treepplr#30](https://github.com/treeppl/treepplr/pull/30)) `tp_parse_smc()` and `tp_parse_mcmc()` now parse per-particle/iteration with explicit indices and (for SMC) join weights by index using `left_join(..., by = "particle")` instead of relying on positional recycling, which is the default behavior of `data.frame()` when handling vectors of different lengths.
- ([dppl#251](https://github.com/miking-lang/miking-dppl/pull/251)) Removed opportunistic redraw of 0 probability `assume`s in `mcmc`, since it does not yield correct inference in general.

### Security

## v0.4.1

### Added
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25 changes: 25 additions & 0 deletions scripts/check-changelog.fish
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Expand Up @@ -187,3 +187,28 @@ showBullets | formatLinks
# treeppl-python#22 (release v0.4)
# treepplr#1 (Not entirely sure, but before the big remake)
# treepplr#9 (Not entirely sure, but before the big remake)
# treeppl#167 (Less precise tests)
# treeppl#168 (record gnu awk dependency in tests)
# treeppl#170 miking#1005 dppl#248 (loader update, only minor internal changes)
# dppl#244 (User relative paths in includes in coreppl instead of `coreppl::`)
# dppl#247 miking#1004 (Unmatched pattern change via `never`)
# miking#1000 (new parser in miking)
# miking#1001 (more flexible running of the test suite)
# miking#1002 (`exec` in miking)
# miking#1003 (nicer runing of tup, with exec instead of xargs)
# miking#1008 (nicer printing when running tests with make)
# miking#1009 (eliminate duplicate code bug, don't remember what the impact was from tppl point of view)
# treepplr#11 (new trepplr api, I _think_ this has been talked about elsewhere)
# treepplr#29 (fix to make it run in the test suite)
# miking#1014, dppl#250 (nix flake)
# miking#1007 (new parser in miking)
# miking#1013 (new interpreter in miking)
# miking#1015 (transpose function in miking)
# miking#1018 (fix `--tag` in `make` mode)
# miking#1019 (generalize type of `mapEq`)
# treeppl-python#24 (release 0.5)


# == stuff for the new graph, eventually ==
# miking#1016 (pass that tracks instantiations in the AST)
# miking#1017 (peval graph, v1)
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