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Centralizing and simplifying transformation system in SpatialData - #1291

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ajkswamy wants to merge 31 commits into

mainfrom

transformation_manager

Draft

Centralizing and simplifying transformation system in SpatialData#1291
ajkswamy wants to merge 31 commits into
mainfrom
transformation_manager

Commits on Oct 27, 2026
- Transformation manager foundation (#1164)
  ajkswamy
  committed
  15d8f00
- Transformation manager foundation (#1164)
  ajkswamy
  committed
  89b8667
- Creates the graph module based on the Ngff* classes
  
  Tomaz-Vieira
  authored and
  ajkswamy
  committed
  db849b7
- addresses some PR comments, simplifies MapAxis
  
  Tomaz-Vieira
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  ajkswamy
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  dccc3f6
- Adds ProjectAxisEdge, makes inverse return optional
  
  Tomaz-Vieira
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  ajkswamy
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  950ffd7
- Moves exceptions to exceptions.py, edge names default to None
  
  Tomaz-Vieira
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  ajkswamy
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  0a2f374
- Use custom exceptions everywhere, adds Raises to docstrings
  
  Tomaz-Vieira
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  ajkswamy
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  d29a2a4
- Fix Affine.from_affine_matrix slicing]
  
  Tomaz-Vieira
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  ajkswamy
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  3618cdd
- Fix coords bug when reading from OMEZarrMultiscale. Some cleanup
  
  Tomaz-Vieira
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  4313c56
- Adds test for parsing OMEZarrMultiscale
  
  Tomaz-Vieira
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  9c2e1d3
- Adds transformations tests, fixes some slicing bugs
  
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  f94498e
- Adds basic .sel test to parsed multiscale
  
  Tomaz-Vieira
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  c0da25f
- Removes unused class
  
  Tomaz-Vieira
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  ajkswamy
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  3a94382
- Adds more slicing tests to parsed multiscales
  
  Tomaz-Vieira
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  ajkswamy
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  129fd2d
- Adds/fixes comments in try_parse_ngff06_multiscales
  
  Tomaz-Vieira
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  ajkswamy
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  e050c10
- Removes to_model methods for now
  
  Tomaz-Vieira
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  ajkswamy
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  5836cd0
- Moves AxisParsingException to exceptions.py
  
  Tomaz-Vieira
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  ajkswamy
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  de5718c
- Moves AxisParsingException back into vert.py to prevent circular imports
  
  Tomaz-Vieira
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  ajkswamy
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  d58038d
- Fixes docstrings, list exceptions in "Raises"
  
  authored and
  ajkswamy
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  55e1ba5
- Incorporates parse_project_axis
  
  Tomaz-Vieira
  authored and
  ajkswamy
  committed
  d802aa8
- Fixes parsing translatiion model getting bad name
  
  authored and
  ajkswamy
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  c18df09
- Adds test for parsing *Edge transforms from ngff
  
  authored and
  ajkswamy
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  c10c758
- Fixes dependencies on ome-zarr and ome-zarr-models
  
  Tomaz-Vieira
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  b6d4a66
- Cleans up transform_points for rotation and affine
  
  Tomaz-Vieira
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  ajkswamy
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  ec7f22b
- Fixes renamed fields in ome-zarr-models
  
  Tomaz-Vieira
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  ajkswamy
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  05a28c7
- Use frozen dataclasses for CoordSystems and Axis. Fix MapAxisEdge
  
  Tomaz-Vieira
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  ajkswamy
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  98c1b37
- Enforces Rotation matrix is orthonormal with det==1
  
  Tomaz-Vieira
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  ajkswamy
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  834f921
- Bump xarray so we can use RangeIndex
  
  Tomaz-Vieira
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  ajkswamy
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  6ca7e21
- Removes try-from_model_or_defaul for now
  
  Tomaz-Vieira
  authored and
  ajkswamy
  committed
  0c3ae64
- Emits warning on AffineEdge.inverse when condition is big
  
  Tomaz-Vieira
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  ajkswamy
  committed
  1951436
- Uses matrix in exceptions
  
  Tomaz-Vieira
  authored and
  ajkswamy
  committed
  475d15b

Commits

Commits on Oct 27, 2026