Biomedical Informatics at ETH Zurich

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1. RGAN RGAN Public archive

   Recurrent (conditional) generative adversarial networks for generating real-valued time series data.

   Python 654 181

2. metagraph metagraph Public

   Scalable annotated de Bruijn graphs for DNA indexing, alignment, and assembly

   C++ 230 26

3. SOM-VAE SOM-VAE Public

   TensorFlow implementation of the SOM-VAE model as described in https://arxiv.org/abs/1806.02199

   Python 198 32

4. GP-VAE GP-VAE Public

   TensorFlow implementation for the GP-VAE model described in https://arxiv.org/abs/1907.04155

   Python 143 31

5. spladder spladder Public

   Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

   Python 115 36

6. DeepSpot DeepSpot Public

   DeepSpot: Deep learning model for predicting spatial transcriptomics from H&E histopathology images. Supports spot-level (Visium) and single-cell (Xenium) resolution.

   Jupyter Notebook 103 21