National Microbiology Laboratory

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1. staramr staramr Public

   Scans genome contigs against the ResFinder, PlasmidFinder, and PointFinder databases.

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2. mob-suite mob-suite Public

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3. ecoli_serotyping ecoli_serotyping Public

   In silico prediction of E. coli serotype, pathotype and shiga toxin subtyping

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4. irida irida Public

   ⛔️ DEPRECATED Canada’s Integrated Rapid Infectious Disease Analysis Platform for Genomic Epidemiology

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5. refseq_masher refseq_masher Public

   Mash MinHash search your nucleotide sequences against a NCBI RefSeq genomes database

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6. sistr_cmd sistr_cmd Public

   SISTR (Salmonella In Silico Typing Resource) command-line tool

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