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@nextstrain

Nextstrain

Real-time tracking of pathogen evolution

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  1. ncov ncov Public

    Nextstrain build for SARS-CoV-2

    Python 1.4k 408

  2. augur augur Public

    Pipeline components for real-time phylodynamic analysis

    Python 279 138

  3. auspice auspice Public

    Web app for visualizing pathogen evolution

    JavaScript 312 172

Repositories

Showing 10 of 105 repositories
  • augur Public

    Pipeline components for real-time phylodynamic analysis

    nextstrain/augur's past year of commit activity
    Python 279 AGPL-3.0 138 230 (1 issue needs help) 41 Updated Oct 14, 2026
  • norovirus Public
    nextstrain/norovirus's past year of commit activity
    Python 3 MIT 1 9 1 Updated Oct 14, 2026
  • nipah Public
    nextstrain/nipah's past year of commit activity
    Python 2 0 2 0 Updated Oct 14, 2026
  • mumps Public

    Nextstrain build for mumps virus

    nextstrain/mumps's past year of commit activity
    Python 2 7 4 2 Updated Oct 14, 2026
  • mpox Public

    Nextstrain build for mpox virus

    nextstrain/mpox's past year of commit activity
    Python 50 MIT 22 19 8 Updated Oct 14, 2026
  • measles Public

    Nextstrain build for measles virus

    nextstrain/measles's past year of commit activity
    Python 4 9 7 2 Updated Oct 14, 2026
  • nextstrain.org Public

    The Nextstrain website

    nextstrain/nextstrain.org's past year of commit activity
    JavaScript 96 AGPL-3.0 56 72 14 Updated Oct 14, 2026
  • variant-nowcast-hub Public Forked from reichlab/variant-nowcast-hub

    A repository to store COVID-19 variant nowcasts collected as a modeling hub.

    nextstrain/variant-nowcast-hub's past year of commit activity
    R 0 MIT 18 0 0 Updated Oct 14, 2026
  • nextclade_data Public

    Datasets for https://github.com/nextstrain/nextclade

    nextstrain/nextclade_data's past year of commit activity
    Python 47 44 11 19 Updated Oct 14, 2026
  • lassa Public

    Nextstrain build for Lassa virus

    nextstrain/lassa's past year of commit activity
    Python 4 5 9 2 Updated Oct 13, 2026
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