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[Fixes #9116] Include per-class rank in EmbeddingCollapseMetric aggregate score - #9117
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Project-MONAI#9116) Signed-off-by: DucAnhValentinoNguyen <ducanhdollar98@gmail.com>
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📝 Walkthrough
Merge Risk: ⚪ Minimal · up to
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| Check name | Status | Explanation |
|---|---|---|
| Title check |  |
The title clearly and concisely identifies the main change: including the per-class rank in the EmbeddingCollapseMetric aggregate score. |
| Description check | |
The description explains the bug, the intended behavior for max and mean reductions, the test coverage, and the completed checks. It follows the repository template. Unchecked integration and document… |
| Linked Issues check | |
Issue #9116 requires the worst per-class rank to enter aggregate as one term. compute_embedding_collapse stores per-class scores, reduces non-None values with max(), and adds that value to the… |
| Out of Scope Changes check | |
The reported source changes update aggregation and related docstrings. The reported test changes verify the requested behavior. No unrelated changes are identified. |
| Docstring Coverage | |
Docstring coverage is 85.71% which is sufficient. The required threshold is 80.00%. Docstring coverage is scoped to functions touched by this diff. Analyzed 7 functions across 2 files. |
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Actionable comments posted: 1
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Inline comments:
In `@tests/metrics/test_embedding_collapse.py`:
- Around line 449-450: Add Google-style docstrings to
_majority_healthy_minority_collapsed with Args and Returns sections, and add
concise descriptive docstrings to
test_collapsed_minority_class_reaches_aggregate and
test_max_aggregate_at_least_worst_per_class. Leave the existing docstrings on
the other test methods unchanged.
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monai/metrics/embedding_collapse.pytests/metrics/test_embedding_collapse.py
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Adds Google-style Args/Returns to _majority_healthy_minority_collapsed and one-line docstrings to test_collapsed_minority_class_reaches_aggregate and test_max_aggregate_at_least_worst_per_class, per CodeRabbit's review comment. No behavioural changes. Signed-off-by: Duc-Anh Valentino Nguyen <61320780+DucAnhValentinoNguyen@users.noreply.github.com>
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Hi @ericspod @KumoLiu @Nic-Ma — checking in on this, it's been about two weeks. I've addressed CodeRabbit's docstring suggestion in the latest commit. I also notice the test workflows haven't run yet (only the DCO check has) — let me know if they need approval on your end, or if you'd like any changes. Thanks for your time! |
…y.github.com> DCO Remediation Commit for Duc-Anh Valentino Nguyen <61320780+DucAnhValentinoNguyen@users.noreply.github.com> I, Duc-Anh Valentino Nguyen <61320780+DucAnhValentinoNguyen@users.noreply.github.com>, hereby add my Signed-off-by to this commit: 371afb6 Signed-off-by: Duc-Anh Valentino Nguyen <61320780+DucAnhValentinoNguyen@users.noreply.github.com> Signed-off-by: Duc-Anh Valentino Nguyen <61320780+DucAnhValentinoNguyen@users.noreply.github.com>
…y.github.com> DCO Remediation Commit for Duc-Anh Valentino Nguyen <61320780+DucAnhValentinoNguyen@users.noreply.github.com> I, Duc-Anh Valentino Nguyen <61320780+DucAnhValentinoNguyen@users.noreply.github.com>, hereby add my Signed-off-by to this commit: 371afb6 Signed-off-by: Duc-Anh Valentino Nguyen <61320780+DucAnhValentinoNguyen@users.noreply.github.com> Signed-off-by: Duc-Anh Valentino Nguyen <61320780+DucAnhValentinoNguyen@users.noreply.github.com>
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Hi @DucAnhValentinoNguyen thanks for this fix, I think it looks good now.
2 participants
Fixes #9116
Description
compute_embedding_collapsebuildsaggregatefrom a fixedprimarykey set that does not contain anyper_class_rank_<cls>key, so per-class rank — the only indicator that can see collapse confined to one class — is computed, returned, and then excluded from every reduction.Under
reduction="max", documented as the worst-case score for safety-critical use, a class can be fully collapsed (per_class_rank_<cls> == 1.0) whileaggregatereports a healthy embedding space, because the global indicators are all genuinely healthy.This folds the worst per-class score into the reduction pool as a single term. Under
maxthe result is the worst case across every indicator, including per-class. Undermean, reducing to one term first keeps one vote per indicator, so the average does not drift as the number of classes grows.Types of changes
./runtests.sh -f -u --net --coverage../runtests.sh --quick --unittests --disttests.make htmlcommand in thedocs/folder.