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@PennLINC

Lifespan Informatics and Neuroimaging Center

The Lifespan Informatics and Neuroimaging Center at the University of Pennylvannia
README.md

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  1. qsiprep qsiprep Public

    Preprocessing of diffusion MRI

    Python 194 63

  2. qsirecon qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    Python 25 17

  3. aslprep aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    Python 65 22

  4. xcp_d xcp_d Public

    Post-processing of fMRIPrep, NiBabies, and HCP outputs

    Python 119 40

  5. CuBIDS CuBIDS Public

    Curation of BIDS (CuBIDS): A sanity-preserving software package for processing BIDS datasets.

    Python 30 13

  6. babs babs Public

    BIDS App Bootstrap (BABS)

    Python 13 8

Repositories

Showing 10 of 242 repositories
  • aslprep Public

    Preprocessing of arterial spin labeling (ASL) data

    PennLINC/aslprep's past year of commit activity
    Python 65 22 51 (2 issues need help) 9 Updated Oct 21, 2026
  • sypres-docs Public

    Analysis and documentation repo for SYPRES.

    PennLINC/sypres-docs's past year of commit activity
    JavaScript 3 MIT 0 2 6 Updated Oct 21, 2026
  • ModelArrayIO Public

    Companion converter software for ModelArray for converting data back and forth from the HDF5 file format.

    PennLINC/ModelArrayIO's past year of commit activity
    Python 0 BSD-3-Clause 0 12 11 Updated Oct 20, 2026
  • TRXScan Public

    Simulate realistic dMRI with streamlines and psegs

    PennLINC/TRXScan's past year of commit activity
    Python 1 Apache-2.0 1 11 0 Updated Oct 19, 2026
  • mrsim-acq Public
    PennLINC/mrsim-acq's past year of commit activity
    Rust 0 0 5 0 Updated Oct 19, 2026
  • aslscan Public

    ASL simulator

    PennLINC/aslscan's past year of commit activity
    Rust 0 0 4 0 Updated Oct 19, 2026
  • macedo_wm_exposome Public

    We investigated how the childhood exposome, a multidimensional measure capturing total environmental exposures across the lifespan, relates to white matter shape and tissue properties in youth.

    PennLINC/macedo_wm_exposome's past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Oct 19, 2026
  • ModelArray Public

    ModelArray: an R package for statistical analysis of fixel-wise data and beyond

    PennLINC/ModelArray's past year of commit activity
    R 7 4 30 2 Updated Oct 18, 2026
  • luo_sex_diff Public
    PennLINC/luo_sex_diff's past year of commit activity
    HTML 0 0 0 0 Updated Oct 17, 2026
  • qsirecon Public

    Reconstruction of preprocessed q-space images (dMRI)

    PennLINC/qsirecon's past year of commit activity
    Python 25 BSD-3-Clause 17 79 5 Updated Oct 16, 2026
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