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Dessimoz Lab

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  1. read2tree read2tree Public

    a tool for inferring species tree from sequencing reads

    Python 162 19

  2. foldtree foldtree Public

    Infers a phylogenetic tree from protein structures

    Jupyter Notebook 112 21

  3. FastOMA FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    Python 104 17

  4. OMArk OMArk Public

    Python 94 7

  5. edgehog edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    Python 40 4

  6. phylo-io phylo-io Public

    Phylo.IO JS tree viewer

    JavaScript 36 13

Repositories

Showing 10 of 59 repositories
  • django-matomo-api-tracking Public

    Django Matomo app allowing server side traffic tracking

    DessimozLab/django-matomo-api-tracking's past year of commit activity
    Python 2 1 0 1 Updated Oct 26, 2026
  • fastoma-bench Public

    Automatic benchmarking of Fastoma over time

    DessimozLab/fastoma-bench's past year of commit activity
    Python 2 0 0 0 Updated Oct 26, 2026
  • FastOMA Public

    FastOMA is a scalable software package to infer orthology relationship.

    DessimozLab/FastOMA's past year of commit activity
    Python 104 MPL-2.0 17 9 5 Updated Oct 26, 2026
  • edgehog Public

    Infering ancestral synteny with hierarchical orthologous groups

    DessimozLab/edgehog's past year of commit activity
    Python 40 MIT 4 3 0 Updated Oct 24, 2026
  • pyoma Public

    Python library to interact with OMA hdf5 files

    DessimozLab/pyoma's past year of commit activity
    Python 1 MPL-2.0 0 2 3 Updated Oct 23, 2026
  • HogProf Public

    Phylogenetic profiling with orthology data

    DessimozLab/HogProf's past year of commit activity
    Jupyter Notebook 14 MIT 2 5 0 Updated Oct 23, 2026
  • OMArk Public
    DessimozLab/OMArk's past year of commit activity
    Python 94 LGPL-3.0 7 12 2 Updated Oct 23, 2026
  • pyham Public
    DessimozLab/pyham's past year of commit activity
    Python 12 MIT 7 10 3 Updated Oct 23, 2026
  • tomato_domestication Public

    Code for the tomato domestication project

    DessimozLab/tomato_domestication's past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Oct 21, 2026
  • ESM3di Public

    Fine-tune ESM models on specialized datasets for feature extraction and 3Di prediction, enabling structural phylogenetics, functional site prediction, and more.

    DessimozLab/ESM3di's past year of commit activity
    Jupyter Notebook 2 MIT 0 1 0 Updated Oct 21, 2026

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