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@10XGenomics

10x Genomics

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  1. cellranger cellranger Public

    10x Genomics Single Cell Analysis

    Rust 480 105

  2. loupeR loupeR Public

    Convert Seurat objects to 10x Genomics Loupe files.

    R 165 19

  3. spaceranger spaceranger Public

    Rust 25 2

Repositories

Showing 10 of 79 repositories
  • analysis_guides Public

    10x Genomics analysis guides files

    10XGenomics/analysis_guides's past year of commit activity
    Jupyter Notebook 49 20 1 0 Updated Nov 10, 2026
  • vartrix Public

    Single-Cell Genotyping Tool

    10XGenomics/vartrix's past year of commit activity
    Rust 216 MIT 29 29 6 Updated Nov 9, 2026
  • infercnvpy Public Forked from icbi-lab/infercnvpy

    Infer copy number variation (CNV) from scRNA-seq data. Plays nicely with Scanpy.

    10XGenomics/infercnvpy's past year of commit activity
    Python 0 BSD-3-Clause 33 0 1 Updated Nov 9, 2026
  • spatialdata-io Public Forked from scverse/spatialdata-io
    10XGenomics/spatialdata-io's past year of commit activity
    Python 3 BSD-3-Clause 66 0 0 Updated Nov 4, 2026
  • bamtofastq Public

    Convert 10x BAM files to the original FASTQs compatible with 10x pipelines

    10XGenomics/bamtofastq's past year of commit activity
    Rust 69 MIT 7 17 10 Updated Nov 3, 2026
  • scan-rs Public

    Single-cell analysis methods in Rust

    10XGenomics/scan-rs's past year of commit activity
    Rust 36 2 1 1 Updated Nov 3, 2026
  • websummary Public

    Generate an HTML report in Rust

    10XGenomics/websummary's past year of commit activity
    Rust 5 0 0 2 Updated Nov 3, 2026
  • simple_excel_writer Public Forked from outersky/simple_excel_writer

    simple excel writer in Rust

    10XGenomics/simple_excel_writer's past year of commit activity
    Rust 0 Apache-2.0 28 0 0 Updated Nov 2, 2026
  • rust-shardio Public

    Out-of-memory sorting of large datasets map / reduce style processing

    10XGenomics/rust-shardio's past year of commit activity
    Rust 48 MIT 5 3 3 Updated Oct 30, 2026
  • seurat Public Forked from satijalab/seurat

    R toolkit for single cell genomics

    10XGenomics/seurat's past year of commit activity
    R 4 1,013 0 1 Updated Oct 28, 2026
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